Index

_

__init__() (adelie.adelie_core.configs.Configs method), [1] (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1] (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) (adelie.adelie_core.matrix.MatrixCovBase32 method) (adelie.adelie_core.matrix.MatrixCovBase64 method), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 method) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 method), [1] (adelie.adelie_core.matrix.MatrixCovDense32C method) (adelie.adelie_core.matrix.MatrixCovDense32F method) (adelie.adelie_core.matrix.MatrixCovDense64C method) (adelie.adelie_core.matrix.MatrixCovDense64F method), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C method) (adelie.adelie_core.matrix.MatrixCovLazyCov32F method) (adelie.adelie_core.matrix.MatrixCovLazyCov64C method) (adelie.adelie_core.matrix.MatrixCovLazyCov64F method), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F method) (adelie.adelie_core.matrix.MatrixCovSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] (adelie.adelie_core.state.StateBVLS32 method) (adelie.adelie_core.state.StateBVLS64 method) (adelie.adelie_core.state.StateCSSCov32 method) (adelie.adelie_core.state.StateCSSCov64 method) (adelie.adelie_core.state.StateGaussianCov32 method) (adelie.adelie_core.state.StateGaussianCov64 method), [1] (adelie.adelie_core.state.StateGaussianNaive32 method) (adelie.adelie_core.state.StateGaussianNaive64 method), [1] (adelie.adelie_core.state.StateGaussianPinCov32 method) (adelie.adelie_core.state.StateGaussianPinCov64 method), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 method) (adelie.adelie_core.state.StateGaussianPinNaive64 method), [1] (adelie.adelie_core.state.StateGlmNaive32 method) (adelie.adelie_core.state.StateGlmNaive64 method), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 method) (adelie.adelie_core.state.StateMultiGaussianNaive64 method), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 method) (adelie.adelie_core.state.StateMultiGlmNaive64 method), [1] (adelie.adelie_core.state.StatePinball32 method) (adelie.adelie_core.state.StatePinball64 method) (adelie.cv.CVGrpnetResult method), [1] (adelie.diagnostic.DiagnosticCov method), [1] (adelie.diagnostic.DiagnosticNaive method), [1] (adelie.io.snp_phased_ancestry method), [1] (adelie.io.snp_unphased method), [1] (adelie.sklearn.CSSModelSelection method) (adelie.sklearn.GroupElasticNet method)

A

A (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] abs_grad (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] active_begins (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] active_order (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] active_set (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) active_set_size (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) active_sizes (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1]

adelie.configs module adelie.constraint module adelie.cv module adelie.data module adelie.diagnostic module adelie.glm module adelie.io module adelie.matrix module adelie.sklearn module adelie.solver module adelie.state module adev_tol (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] alpha (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] ancestries (adelie.io.snp_phased_ancestry attribute), [1] avg_losses (adelie.cv.CVGrpnetResult attribute), [1]

B

benchmark_active (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] benchmark_fit_active (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) benchmark_fit_screen (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) benchmark_gradient (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) benchmark_init (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) benchmark_invariance (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] benchmark_kkt (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] benchmark_L_T (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) benchmark_L_U (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) benchmark_resid_fwd (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) benchmark_S_resid (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) benchmark_scores (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) benchmark_screen (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] benchmark_viols_sort (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) best_idx (adelie.cv.CVGrpnetResult attribute), [1] beta (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) beta0 (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] betas (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] binomial() (in module adelie.glm), [1] block_diag() (in module adelie.matrix), [1] bmul() (adelie.adelie_core.matrix.MatrixCovBase32 method) (adelie.adelie_core.matrix.MatrixCovBase64 method), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 method) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 method), [1] (adelie.adelie_core.matrix.MatrixCovDense32C method) (adelie.adelie_core.matrix.MatrixCovDense32F method) (adelie.adelie_core.matrix.MatrixCovDense64C method) (adelie.adelie_core.matrix.MatrixCovDense64F method), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C method) (adelie.adelie_core.matrix.MatrixCovLazyCov32F method) (adelie.adelie_core.matrix.MatrixCovLazyCov64C method) (adelie.adelie_core.matrix.MatrixCovLazyCov64F method), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F method) (adelie.adelie_core.matrix.MatrixCovSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1]

bmul_safe() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] box() (in module adelie.constraint) btmul() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] buffer_size() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) bvls() (in module adelie.solver) (in module adelie.state)

C

clear() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) cmul() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] cmul_safe() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] coefficient() (in module adelie.diagnostic), [1] cols (adelie.io.snp_phased_ancestry attribute), [1] (adelie.io.snp_unphased attribute), [1] cols() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) (adelie.adelie_core.matrix.MatrixCovBase32 method) (adelie.adelie_core.matrix.MatrixCovBase64 method), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 method) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 method), [1] (adelie.adelie_core.matrix.MatrixCovDense32C method) (adelie.adelie_core.matrix.MatrixCovDense32F method) (adelie.adelie_core.matrix.MatrixCovDense64C method) (adelie.adelie_core.matrix.MatrixCovDense64F method), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C method) (adelie.adelie_core.matrix.MatrixCovLazyCov32F method) (adelie.adelie_core.matrix.MatrixCovLazyCov64C method) (adelie.adelie_core.matrix.MatrixCovLazyCov64F method), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F method) (adelie.adelie_core.matrix.MatrixCovSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1]

concatenate() (in module adelie.matrix), [1] Configs (class in adelie.adelie_core.configs), [1] constraint_buffer_size (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] ConstraintBase32 (class in adelie.adelie_core.constraint) ConstraintBase64 (class in adelie.adelie_core.constraint), [1] ConstraintBox32 (class in adelie.adelie_core.constraint) ConstraintBox64 (class in adelie.adelie_core.constraint) ConstraintLinear32 (class in adelie.adelie_core.constraint) ConstraintLinear64 (class in adelie.adelie_core.constraint) ConstraintOneSided32 (class in adelie.adelie_core.constraint) ConstraintOneSided64 (class in adelie.adelie_core.constraint) ConstraintOneSidedADMM32 (class in adelie.adelie_core.constraint) ConstraintOneSidedADMM64 (class in adelie.adelie_core.constraint) constraints (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] convex_relu() (in module adelie.matrix) cov() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] cox() (in module adelie.glm), [1] css_cov() (in module adelie.solver) (in module adelie.state) CSSModelSelection (class in adelie.sklearn) ctmul() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] cv_grpnet() (in module adelie.cv), [1] CVGrpnetResult (class in adelie.cv), [1]

D

dbeta_tol (adelie.adelie_core.configs.Configs attribute), [1] dbeta_tol_def (adelie.adelie_core.configs.Configs attribute), [1] dbg_active_set (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) dbg_beta (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) dbg_iter (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) dbg_loss (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) ddev_tol (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] dense() (in module adelie.data), [1] (in module adelie.matrix), [1] devs (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] diagnostic() (in module adelie.diagnostic), [1] DiagnosticCov (class in adelie.diagnostic), [1] DiagnosticNaive (class in adelie.diagnostic), [1] dual() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method)

dual_groups (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] dual_size (adelie.adelie_core.constraint.ConstraintBase32 attribute) (adelie.adelie_core.constraint.ConstraintBase64 attribute), [1] (adelie.adelie_core.constraint.ConstraintBox32 attribute) (adelie.adelie_core.constraint.ConstraintBox64 attribute) (adelie.adelie_core.constraint.ConstraintLinear32 attribute) (adelie.adelie_core.constraint.ConstraintLinear64 attribute) (adelie.adelie_core.constraint.ConstraintOneSided32 attribute) (adelie.adelie_core.constraint.ConstraintOneSided64 attribute) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 attribute) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 attribute) duals (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] duals() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) duals_nnz() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method)

E

eager_cov() (in module adelie.matrix), [1] early_exit (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1]

endian (adelie.io.snp_phased_ancestry attribute), [1] (adelie.io.snp_unphased attribute), [1] eta (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1]

F

fit() (adelie.cv.CVGrpnetResult method), [1] (adelie.sklearn.CSSModelSelection method) (adelie.sklearn.GroupElasticNet method)

fit_cov() (adelie.sklearn.CSSModelSelection method)

G

gaussian() (in module adelie.glm), [1] gaussian_cov() (in module adelie.solver), [1] (in module adelie.state), [1] gaussian_naive() (in module adelie.state), [1] gaussian_pin_cov() (in module adelie.state), [1] gaussian_pin_naive() (in module adelie.state), [1] get_metadata_routing() (adelie.sklearn.CSSModelSelection method) (adelie.sklearn.GroupElasticNet method) get_params() (adelie.sklearn.CSSModelSelection method) (adelie.sklearn.GroupElasticNet method) glm_naive() (in module adelie.state), [1] GlmBase32 (class in adelie.adelie_core.glm) GlmBase64 (class in adelie.adelie_core.glm), [1] GlmBinomialLogit32 (class in adelie.adelie_core.glm) GlmBinomialLogit64 (class in adelie.adelie_core.glm), [1] GlmBinomialProbit32 (class in adelie.adelie_core.glm) GlmBinomialProbit64 (class in adelie.adelie_core.glm), [1] GlmCox32 (class in adelie.adelie_core.glm) GlmCox64 (class in adelie.adelie_core.glm), [1] GlmGaussian32 (class in adelie.adelie_core.glm) GlmGaussian64 (class in adelie.adelie_core.glm), [1] GlmMultiBase32 (class in adelie.adelie_core.glm) GlmMultiBase64 (class in adelie.adelie_core.glm), [1] GlmMultiGaussian32 (class in adelie.adelie_core.glm) GlmMultiGaussian64 (class in adelie.adelie_core.glm), [1] GlmMultinomial32 (class in adelie.adelie_core.glm) GlmMultinomial64 (class in adelie.adelie_core.glm), [1] GlmPoisson32 (class in adelie.adelie_core.glm) GlmPoisson64 (class in adelie.adelie_core.glm), [1] grad (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) gradient() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1]

gradient_norms() (in module adelie.diagnostic), [1] gradient_scores() (in module adelie.diagnostic), [1] gradient_static() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) gradients() (in module adelie.diagnostic), [1] group_sizes (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F attribute), [1] (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] GroupElasticNet (class in adelie.sklearn) groups (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F attribute), [1] (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] grpnet() (in module adelie.solver), [1]

H

hessian() (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1]

hessian_min (adelie.adelie_core.configs.Configs attribute), [1] hessian_min_def (adelie.adelie_core.configs.Configs attribute), [1]

I

impute (adelie.io.snp_unphased attribute), [1] interaction() (in module adelie.matrix), [1] intercept (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] intercepts (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] inv_hessian_gradient() (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1] inv_link() (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1]

irls_max_iters (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] irls_tol (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] is_active (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) is_multi (adelie.adelie_core.glm.GlmBase32 attribute) (adelie.adelie_core.glm.GlmBase64 attribute), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 attribute) (adelie.adelie_core.glm.GlmBinomialLogit64 attribute), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 attribute) (adelie.adelie_core.glm.GlmBinomialProbit64 attribute), [1] (adelie.adelie_core.glm.GlmCox32 attribute) (adelie.adelie_core.glm.GlmCox64 attribute), [1] (adelie.adelie_core.glm.GlmGaussian32 attribute) (adelie.adelie_core.glm.GlmGaussian64 attribute), [1] (adelie.adelie_core.glm.GlmMultiBase32 attribute) (adelie.adelie_core.glm.GlmMultiBase64 attribute), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 attribute) (adelie.adelie_core.glm.GlmMultiGaussian64 attribute), [1] (adelie.adelie_core.glm.GlmMultinomial32 attribute) (adelie.adelie_core.glm.GlmMultinomial64 attribute), [1] (adelie.adelie_core.glm.GlmPoisson32 attribute) (adelie.adelie_core.glm.GlmPoisson64 attribute), [1] is_read (adelie.io.snp_phased_ancestry attribute), [1] (adelie.io.snp_unphased attribute), [1] is_screen (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) iters (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute)

K

kronecker_eye() (in module adelie.matrix), [1]

L

L_T (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) lazy_cov() (in module adelie.matrix), [1] linear() (in module adelie.constraint) lmda (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] lmda_max (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] lmda_path (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] lmda_path_size (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] lmdas (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.cv.CVGrpnetResult attribute), [1]

loss (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) loss() (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1] loss_full (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] loss_full() (adelie.adelie_core.glm.GlmBase32 method) (adelie.adelie_core.glm.GlmBase64 method), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 method) (adelie.adelie_core.glm.GlmBinomialLogit64 method), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 method) (adelie.adelie_core.glm.GlmBinomialProbit64 method), [1] (adelie.adelie_core.glm.GlmCox32 method) (adelie.adelie_core.glm.GlmCox64 method), [1] (adelie.adelie_core.glm.GlmGaussian32 method) (adelie.adelie_core.glm.GlmGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultiBase32 method) (adelie.adelie_core.glm.GlmMultiBase64 method), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 method) (adelie.adelie_core.glm.GlmMultiGaussian64 method), [1] (adelie.adelie_core.glm.GlmMultinomial32 method) (adelie.adelie_core.glm.GlmMultinomial64 method), [1] (adelie.adelie_core.glm.GlmPoisson32 method) (adelie.adelie_core.glm.GlmPoisson64 method), [1] loss_null (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] losses (adelie.cv.CVGrpnetResult attribute), [1] lower() (in module adelie.constraint), [1]

M

MatrixConstraintBase32 (class in adelie.adelie_core.matrix) MatrixConstraintBase64 (class in adelie.adelie_core.matrix) MatrixConstraintDense32C (class in adelie.adelie_core.matrix) MatrixConstraintDense32F (class in adelie.adelie_core.matrix) MatrixConstraintDense64C (class in adelie.adelie_core.matrix) MatrixConstraintDense64F (class in adelie.adelie_core.matrix) MatrixConstraintSparse32C (class in adelie.adelie_core.matrix) MatrixConstraintSparse64C (class in adelie.adelie_core.matrix) MatrixCovBase32 (class in adelie.adelie_core.matrix) MatrixCovBase64 (class in adelie.adelie_core.matrix), [1] MatrixCovBlockDiag32 (class in adelie.adelie_core.matrix) MatrixCovBlockDiag64 (class in adelie.adelie_core.matrix), [1] MatrixCovDense32C (class in adelie.adelie_core.matrix) MatrixCovDense32F (class in adelie.adelie_core.matrix) MatrixCovDense64C (class in adelie.adelie_core.matrix) MatrixCovDense64F (class in adelie.adelie_core.matrix), [1] MatrixCovLazyCov32C (class in adelie.adelie_core.matrix) MatrixCovLazyCov32F (class in adelie.adelie_core.matrix) MatrixCovLazyCov64C (class in adelie.adelie_core.matrix) MatrixCovLazyCov64F (class in adelie.adelie_core.matrix), [1] MatrixCovSparse32F (class in adelie.adelie_core.matrix) MatrixCovSparse64F (class in adelie.adelie_core.matrix), [1] MatrixNaiveBase32 (class in adelie.adelie_core.matrix) MatrixNaiveBase64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveBlockDiag32 (class in adelie.adelie_core.matrix) MatrixNaiveBlockDiag64 (class in adelie.adelie_core.matrix) MatrixNaiveCConcatenate32 (class in adelie.adelie_core.matrix) MatrixNaiveCConcatenate64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveConvexGatedReluDense32C (class in adelie.adelie_core.matrix) MatrixNaiveConvexGatedReluDense32F (class in adelie.adelie_core.matrix) MatrixNaiveConvexGatedReluDense64C (class in adelie.adelie_core.matrix) MatrixNaiveConvexGatedReluDense64F (class in adelie.adelie_core.matrix) MatrixNaiveConvexGatedReluSparse32F (class in adelie.adelie_core.matrix) MatrixNaiveConvexGatedReluSparse64F (class in adelie.adelie_core.matrix) MatrixNaiveConvexReluDense32C (class in adelie.adelie_core.matrix) MatrixNaiveConvexReluDense32F (class in adelie.adelie_core.matrix) MatrixNaiveConvexReluDense64C (class in adelie.adelie_core.matrix) MatrixNaiveConvexReluDense64F (class in adelie.adelie_core.matrix) MatrixNaiveConvexReluSparse32F (class in adelie.adelie_core.matrix) MatrixNaiveConvexReluSparse64F (class in adelie.adelie_core.matrix) MatrixNaiveCSubset32 (class in adelie.adelie_core.matrix) MatrixNaiveCSubset64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveDense32C (class in adelie.adelie_core.matrix) MatrixNaiveDense32F (class in adelie.adelie_core.matrix) MatrixNaiveDense64C (class in adelie.adelie_core.matrix) MatrixNaiveDense64F (class in adelie.adelie_core.matrix), [1] MatrixNaiveInteractionDense32C (class in adelie.adelie_core.matrix) MatrixNaiveInteractionDense32F (class in adelie.adelie_core.matrix) MatrixNaiveInteractionDense64C (class in adelie.adelie_core.matrix) MatrixNaiveInteractionDense64F (class in adelie.adelie_core.matrix), [1] MatrixNaiveKroneckerEye32 (class in adelie.adelie_core.matrix) MatrixNaiveKroneckerEye64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveKroneckerEyeDense32C (class in adelie.adelie_core.matrix) MatrixNaiveKroneckerEyeDense32F (class in adelie.adelie_core.matrix) MatrixNaiveKroneckerEyeDense64C (class in adelie.adelie_core.matrix) MatrixNaiveKroneckerEyeDense64F (class in adelie.adelie_core.matrix), [1] MatrixNaiveOneHotDense32C (class in adelie.adelie_core.matrix) MatrixNaiveOneHotDense32F (class in adelie.adelie_core.matrix) MatrixNaiveOneHotDense64C (class in adelie.adelie_core.matrix) MatrixNaiveOneHotDense64F (class in adelie.adelie_core.matrix), [1] MatrixNaiveRConcatenate32 (class in adelie.adelie_core.matrix) MatrixNaiveRConcatenate64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveRSubset32 (class in adelie.adelie_core.matrix) MatrixNaiveRSubset64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveSNPPhasedAncestry32 (class in adelie.adelie_core.matrix) MatrixNaiveSNPPhasedAncestry64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveSNPUnphased32 (class in adelie.adelie_core.matrix) MatrixNaiveSNPUnphased64 (class in adelie.adelie_core.matrix), [1] MatrixNaiveSparse32F (class in adelie.adelie_core.matrix) MatrixNaiveSparse64F (class in adelie.adelie_core.matrix), [1] MatrixNaiveStandardize32 (class in adelie.adelie_core.matrix) MatrixNaiveStandardize64 (class in adelie.adelie_core.matrix), [1] max_active_size (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] max_iters (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] max_screen_size (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] max_solver_value (adelie.adelie_core.configs.Configs attribute), [1] mean() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1]

min_bytes (adelie.adelie_core.configs.Configs attribute), [1] min_bytes_def (adelie.adelie_core.configs.Configs attribute), [1] min_ratio (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] module adelie.configs adelie.constraint adelie.cv adelie.data adelie.diagnostic adelie.glm adelie.io adelie.matrix adelie.sklearn adelie.solver adelie.state mul() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) (adelie.adelie_core.matrix.MatrixCovBase32 method) (adelie.adelie_core.matrix.MatrixCovBase64 method), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 method) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 method), [1] (adelie.adelie_core.matrix.MatrixCovDense32C method) (adelie.adelie_core.matrix.MatrixCovDense32F method) (adelie.adelie_core.matrix.MatrixCovDense64C method) (adelie.adelie_core.matrix.MatrixCovDense64F method), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C method) (adelie.adelie_core.matrix.MatrixCovLazyCov32F method) (adelie.adelie_core.matrix.MatrixCovLazyCov64C method) (adelie.adelie_core.matrix.MatrixCovLazyCov64F method), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F method) (adelie.adelie_core.matrix.MatrixCovSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] multi_intercept (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] multigaussian() (in module adelie.glm), [1] multigaussian_naive() (in module adelie.state), [1] multiglm_naive() (in module adelie.state), [1] multinomial() (in module adelie.glm), [1]

N

n_classes (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] n_threads (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] n_valid_solutions (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] name (adelie.adelie_core.glm.GlmBase32 attribute) (adelie.adelie_core.glm.GlmBase64 attribute), [1] (adelie.adelie_core.glm.GlmBinomialLogit32 attribute) (adelie.adelie_core.glm.GlmBinomialLogit64 attribute), [1] (adelie.adelie_core.glm.GlmBinomialProbit32 attribute) (adelie.adelie_core.glm.GlmBinomialProbit64 attribute), [1] (adelie.adelie_core.glm.GlmCox32 attribute) (adelie.adelie_core.glm.GlmCox64 attribute), [1] (adelie.adelie_core.glm.GlmGaussian32 attribute) (adelie.adelie_core.glm.GlmGaussian64 attribute), [1] (adelie.adelie_core.glm.GlmMultiBase32 attribute) (adelie.adelie_core.glm.GlmMultiBase64 attribute), [1] (adelie.adelie_core.glm.GlmMultiGaussian32 attribute) (adelie.adelie_core.glm.GlmMultiGaussian64 attribute), [1] (adelie.adelie_core.glm.GlmMultinomial32 attribute) (adelie.adelie_core.glm.GlmMultinomial64 attribute), [1] (adelie.adelie_core.glm.GlmPoisson32 attribute) (adelie.adelie_core.glm.GlmPoisson64 attribute), [1] ndim (adelie.adelie_core.matrix.MatrixConstraintBase32 attribute) (adelie.adelie_core.matrix.MatrixConstraintBase64 attribute) (adelie.adelie_core.matrix.MatrixConstraintDense32C attribute) (adelie.adelie_core.matrix.MatrixConstraintDense32F attribute) (adelie.adelie_core.matrix.MatrixConstraintDense64C attribute) (adelie.adelie_core.matrix.MatrixConstraintDense64F attribute) (adelie.adelie_core.matrix.MatrixConstraintSparse32C attribute) (adelie.adelie_core.matrix.MatrixConstraintSparse64C attribute) (adelie.adelie_core.matrix.MatrixCovBase32 attribute) (adelie.adelie_core.matrix.MatrixCovBase64 attribute), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 attribute) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 attribute), [1] (adelie.adelie_core.matrix.MatrixCovDense32C attribute) (adelie.adelie_core.matrix.MatrixCovDense32F attribute) (adelie.adelie_core.matrix.MatrixCovDense64C attribute) (adelie.adelie_core.matrix.MatrixCovDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C attribute) (adelie.adelie_core.matrix.MatrixCovLazyCov32F attribute) (adelie.adelie_core.matrix.MatrixCovLazyCov64C attribute) (adelie.adelie_core.matrix.MatrixCovLazyCov64F attribute), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F attribute) (adelie.adelie_core.matrix.MatrixCovSparse64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 attribute) (adelie.adelie_core.matrix.MatrixNaiveBase64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 attribute) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 attribute) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 attribute) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F attribute) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 attribute) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 attribute) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 attribute) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 attribute) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 attribute) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F attribute) (adelie.adelie_core.matrix.MatrixNaiveSparse64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 attribute) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 attribute), [1]

newton_max_iters (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] newton_tol (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] nnm (adelie.io.snp_unphased attribute), [1] nnz (adelie.io.snp_unphased attribute), [1] nnz0 (adelie.io.snp_phased_ancestry attribute), [1] nnz1 (adelie.io.snp_phased_ancestry attribute), [1]

O

objective() (in module adelie.bcd), [1] (in module adelie.diagnostic), [1] offsets (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1]

one_hot() (in module adelie.matrix), [1] one_sided() (in module adelie.constraint)

P

pb_symbol (adelie.adelie_core.configs.Configs attribute), [1] pb_symbol_def (adelie.adelie_core.configs.Configs attribute), [1] penalty (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] pinball() (in module adelie.solver) (in module adelie.state) pivot_slack_ratio (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] pivot_subset_min (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] pivot_subset_ratio (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] plot_benchmark() (adelie.diagnostic.DiagnosticCov method), [1] (adelie.diagnostic.DiagnosticNaive method), [1] (in module adelie.diagnostic), [1]

plot_coefficients() (adelie.diagnostic.DiagnosticCov method), [1] (adelie.diagnostic.DiagnosticNaive method), [1] (in module adelie.diagnostic), [1] plot_devs() (adelie.diagnostic.DiagnosticCov method), [1] (adelie.diagnostic.DiagnosticNaive method), [1] (in module adelie.diagnostic), [1] plot_kkt() (adelie.diagnostic.DiagnosticCov method), [1] (adelie.diagnostic.DiagnosticNaive method), [1] (in module adelie.diagnostic), [1] plot_loss() (adelie.cv.CVGrpnetResult method), [1] plot_set_sizes() (adelie.diagnostic.DiagnosticCov method), [1] (adelie.diagnostic.DiagnosticNaive method), [1] (in module adelie.diagnostic), [1] poisson() (in module adelie.glm), [1] predict() (adelie.sklearn.GroupElasticNet method) (in module adelie.diagnostic), [1] predict_proba() (adelie.sklearn.GroupElasticNet method) primal_size (adelie.adelie_core.constraint.ConstraintBase32 attribute) (adelie.adelie_core.constraint.ConstraintBase64 attribute), [1] (adelie.adelie_core.constraint.ConstraintBox32 attribute) (adelie.adelie_core.constraint.ConstraintBox64 attribute) (adelie.adelie_core.constraint.ConstraintLinear32 attribute) (adelie.adelie_core.constraint.ConstraintLinear64 attribute) (adelie.adelie_core.constraint.ConstraintOneSided32 attribute) (adelie.adelie_core.constraint.ConstraintOneSided64 attribute) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 attribute) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 attribute) primals() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) project (adelie.adelie_core.configs.Configs attribute), [1] project() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) project_def (adelie.adelie_core.configs.Configs attribute), [1]

R

rdev_tol (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] read() (adelie.io.snp_phased_ancestry method), [1] (adelie.io.snp_unphased method), [1] resid (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) resid_sum (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] residuals() (in module adelie.diagnostic), [1] rmmul() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) rmmul_safe() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) root() (in module adelie.bcd), [1] root_function() (in module adelie.bcd), [1] root_lower_bound() (in module adelie.bcd), [1] root_upper_bound() (in module adelie.bcd), [1] rows (adelie.io.snp_phased_ancestry attribute), [1] (adelie.io.snp_unphased attribute), [1] rows() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) (adelie.adelie_core.matrix.MatrixCovBase32 method) (adelie.adelie_core.matrix.MatrixCovBase64 method), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 method) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 method), [1] (adelie.adelie_core.matrix.MatrixCovDense32C method) (adelie.adelie_core.matrix.MatrixCovDense32F method) (adelie.adelie_core.matrix.MatrixCovDense64C method) (adelie.adelie_core.matrix.MatrixCovDense64F method), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C method) (adelie.adelie_core.matrix.MatrixCovLazyCov32F method) (adelie.adelie_core.matrix.MatrixCovLazyCov64C method) (adelie.adelie_core.matrix.MatrixCovLazyCov64F method), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F method) (adelie.adelie_core.matrix.MatrixCovSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1]

rsq (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] rsqs (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] rvmul() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) rvmul_safe() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) rvtmul() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method)

S

S_resid (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) score() (adelie.sklearn.CSSModelSelection method) (adelie.sklearn.GroupElasticNet method) screen_AS (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) screen_ASAT_diag (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) screen_begins (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] screen_beta (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] screen_grad (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] screen_hashset (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] screen_is_active (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] screen_rule (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] screen_set (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) screen_set_size (adelie.adelie_core.state.StateBVLS32 attribute) (adelie.adelie_core.state.StateBVLS64 attribute) (adelie.adelie_core.state.StatePinball32 attribute) (adelie.adelie_core.state.StatePinball64 attribute) screen_sizes (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] screen_subset_order (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] screen_subset_ordered (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] screen_transforms (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] screen_vars (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] screen_X_means (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] set_configs() (in module adelie.configs), [1] set_params() (adelie.sklearn.CSSModelSelection method) (adelie.sklearn.GroupElasticNet method) set_score_request() (adelie.sklearn.CSSModelSelection method) setup_lmda_max (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] setup_lmda_path (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] setup_loss_null (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1] shape (adelie.adelie_core.matrix.MatrixConstraintBase32 attribute) (adelie.adelie_core.matrix.MatrixConstraintBase64 attribute) (adelie.adelie_core.matrix.MatrixConstraintDense32C attribute) (adelie.adelie_core.matrix.MatrixConstraintDense32F attribute) (adelie.adelie_core.matrix.MatrixConstraintDense64C attribute) (adelie.adelie_core.matrix.MatrixConstraintDense64F attribute) (adelie.adelie_core.matrix.MatrixConstraintSparse32C attribute) (adelie.adelie_core.matrix.MatrixConstraintSparse64C attribute) (adelie.adelie_core.matrix.MatrixCovBase32 attribute) (adelie.adelie_core.matrix.MatrixCovBase64 attribute), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 attribute) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 attribute), [1] (adelie.adelie_core.matrix.MatrixCovDense32C attribute) (adelie.adelie_core.matrix.MatrixCovDense32F attribute) (adelie.adelie_core.matrix.MatrixCovDense64C attribute) (adelie.adelie_core.matrix.MatrixCovDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C attribute) (adelie.adelie_core.matrix.MatrixCovLazyCov32F attribute) (adelie.adelie_core.matrix.MatrixCovLazyCov64C attribute) (adelie.adelie_core.matrix.MatrixCovLazyCov64F attribute), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F attribute) (adelie.adelie_core.matrix.MatrixCovSparse64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveBase32 attribute) (adelie.adelie_core.matrix.MatrixNaiveBase64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 attribute) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 attribute) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 attribute) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F attribute) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F attribute) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 attribute) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C attribute) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 attribute) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 attribute) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 attribute) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 attribute) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F attribute) (adelie.adelie_core.matrix.MatrixNaiveSparse64F attribute), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 attribute) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 attribute), [1]

snp_phased_ancestry (class in adelie.io), [1] snp_phased_ancestry() (in module adelie.data), [1] (in module adelie.matrix), [1] snp_unphased (class in adelie.io), [1] snp_unphased() (in module adelie.data), [1] (in module adelie.matrix), [1] snps (adelie.io.snp_phased_ancestry attribute), [1] (adelie.io.snp_unphased attribute), [1] solve() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) (adelie.adelie_core.state.StateBVLS32 method) (adelie.adelie_core.state.StateBVLS64 method) (adelie.adelie_core.state.StateCSSCov32 method) (adelie.adelie_core.state.StateCSSCov64 method) (adelie.adelie_core.state.StateGaussianCov32 method) (adelie.adelie_core.state.StateGaussianCov64 method), [1] (adelie.adelie_core.state.StateGaussianNaive32 method) (adelie.adelie_core.state.StateGaussianNaive64 method), [1] (adelie.adelie_core.state.StateGaussianPinCov32 method) (adelie.adelie_core.state.StateGaussianPinCov64 method), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 method) (adelie.adelie_core.state.StateGaussianPinNaive64 method), [1] (adelie.adelie_core.state.StateGlmNaive32 method) (adelie.adelie_core.state.StateGlmNaive64 method), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 method) (adelie.adelie_core.state.StateMultiGaussianNaive64 method), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 method) (adelie.adelie_core.state.StateMultiGlmNaive64 method), [1] (adelie.adelie_core.state.StatePinball32 method) (adelie.adelie_core.state.StatePinball64 method) (in module adelie.bcd), [1] solve_zero() (adelie.adelie_core.constraint.ConstraintBase32 method) (adelie.adelie_core.constraint.ConstraintBase64 method), [1] (adelie.adelie_core.constraint.ConstraintBox32 method) (adelie.adelie_core.constraint.ConstraintBox64 method) (adelie.adelie_core.constraint.ConstraintLinear32 method) (adelie.adelie_core.constraint.ConstraintLinear64 method) (adelie.adelie_core.constraint.ConstraintOneSided32 method) (adelie.adelie_core.constraint.ConstraintOneSided64 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM32 method) (adelie.adelie_core.constraint.ConstraintOneSidedADMM64 method) sp_mul() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) sp_tmul() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] sparse() (in module adelie.matrix), [1] sq_mul() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1] standardize() (in module adelie.matrix), [1] StateBVLS32 (class in adelie.adelie_core.state) StateBVLS64 (class in adelie.adelie_core.state) StateCSSCov32 (class in adelie.adelie_core.state) StateCSSCov64 (class in adelie.adelie_core.state) StateGaussianCov32 (class in adelie.adelie_core.state) StateGaussianCov64 (class in adelie.adelie_core.state), [1] StateGaussianNaive32 (class in adelie.adelie_core.state) StateGaussianNaive64 (class in adelie.adelie_core.state), [1] StateGaussianPinCov32 (class in adelie.adelie_core.state) StateGaussianPinCov64 (class in adelie.adelie_core.state), [1] StateGaussianPinNaive32 (class in adelie.adelie_core.state) StateGaussianPinNaive64 (class in adelie.adelie_core.state), [1] StateGlmNaive32 (class in adelie.adelie_core.state) StateGlmNaive64 (class in adelie.adelie_core.state), [1] StateMultiGaussianNaive32 (class in adelie.adelie_core.state) StateMultiGaussianNaive64 (class in adelie.adelie_core.state), [1] StateMultiGlmNaive32 (class in adelie.adelie_core.state) StateMultiGlmNaive64 (class in adelie.adelie_core.state), [1] StatePinball32 (class in adelie.adelie_core.state) StatePinball64 (class in adelie.adelie_core.state) subset (adelie.adelie_core.state.StateCSSCov32 attribute) (adelie.adelie_core.state.StateCSSCov64 attribute) subset() (in module adelie.matrix), [1]

T

tmul() (adelie.adelie_core.matrix.MatrixConstraintBase32 method) (adelie.adelie_core.matrix.MatrixConstraintBase64 method) (adelie.adelie_core.matrix.MatrixConstraintDense32C method) (adelie.adelie_core.matrix.MatrixConstraintDense32F method) (adelie.adelie_core.matrix.MatrixConstraintDense64C method) (adelie.adelie_core.matrix.MatrixConstraintDense64F method) (adelie.adelie_core.matrix.MatrixConstraintSparse32C method) (adelie.adelie_core.matrix.MatrixConstraintSparse64C method) to_dense() (adelie.adelie_core.matrix.MatrixCovBase32 method) (adelie.adelie_core.matrix.MatrixCovBase64 method), [1] (adelie.adelie_core.matrix.MatrixCovBlockDiag32 method) (adelie.adelie_core.matrix.MatrixCovBlockDiag64 method), [1] (adelie.adelie_core.matrix.MatrixCovDense32C method) (adelie.adelie_core.matrix.MatrixCovDense32F method) (adelie.adelie_core.matrix.MatrixCovDense64C method) (adelie.adelie_core.matrix.MatrixCovDense64F method), [1] (adelie.adelie_core.matrix.MatrixCovLazyCov32C method) (adelie.adelie_core.matrix.MatrixCovLazyCov32F method) (adelie.adelie_core.matrix.MatrixCovLazyCov64C method) (adelie.adelie_core.matrix.MatrixCovLazyCov64F method), [1] (adelie.adelie_core.matrix.MatrixCovSparse32F method) (adelie.adelie_core.matrix.MatrixCovSparse64F method), [1] (adelie.io.snp_phased_ancestry method), [1] (adelie.io.snp_unphased method), [1]

tol (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinCov32 attribute) (adelie.adelie_core.state.StateGaussianPinCov64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1]

U

upper() (in module adelie.constraint)

V

v (adelie.adelie_core.state.StateGaussianCov32 attribute) (adelie.adelie_core.state.StateGaussianCov64 attribute), [1] var() (adelie.adelie_core.matrix.MatrixNaiveBase32 method) (adelie.adelie_core.matrix.MatrixNaiveBase64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveBlockDiag32 method) (adelie.adelie_core.matrix.MatrixNaiveBlockDiag64 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveCConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexGatedReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64C method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluDense64F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveConvexReluSparse64F method) (adelie.adelie_core.matrix.MatrixNaiveCSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveCSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveDense32C method) (adelie.adelie_core.matrix.MatrixNaiveDense32F method) (adelie.adelie_core.matrix.MatrixNaiveDense64C method) (adelie.adelie_core.matrix.MatrixNaiveDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense32F method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64C method) (adelie.adelie_core.matrix.MatrixNaiveInteractionDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye32 method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEye64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense32F method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64C method) (adelie.adelie_core.matrix.MatrixNaiveKroneckerEyeDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense32F method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64C method) (adelie.adelie_core.matrix.MatrixNaiveOneHotDense64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveRConcatenate32 method) (adelie.adelie_core.matrix.MatrixNaiveRConcatenate64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveRSubset32 method) (adelie.adelie_core.matrix.MatrixNaiveRSubset64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPPhasedAncestry64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased32 method) (adelie.adelie_core.matrix.MatrixNaiveSNPUnphased64 method), [1] (adelie.adelie_core.matrix.MatrixNaiveSparse32F method) (adelie.adelie_core.matrix.MatrixNaiveSparse64F method), [1] (adelie.adelie_core.matrix.MatrixNaiveStandardize32 method) (adelie.adelie_core.matrix.MatrixNaiveStandardize64 method), [1]

W

weights (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1]

write() (adelie.io.snp_phased_ancestry method), [1] (adelie.io.snp_unphased method), [1]

X

X (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateGlmNaive32 attribute) (adelie.adelie_core.state.StateGlmNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGlmNaive32 attribute) (adelie.adelie_core.state.StateMultiGlmNaive64 attribute), [1]

X_means (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1]

Y

y_mean (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1]

y_var (adelie.adelie_core.state.StateGaussianNaive32 attribute) (adelie.adelie_core.state.StateGaussianNaive64 attribute), [1] (adelie.adelie_core.state.StateGaussianPinNaive32 attribute) (adelie.adelie_core.state.StateGaussianPinNaive64 attribute), [1] (adelie.adelie_core.state.StateMultiGaussianNaive32 attribute) (adelie.adelie_core.state.StateMultiGaussianNaive64 attribute), [1]